Research Publication

24. Ashok Patowary, Ryan Nesbitt, Marilyn Archer, Raphael Bernier, Zoran Brkanac. Next Generation Sequencing Mitochondrial DNA Analysis in Autism Spectrum Disorder.  Autism Research 2017 10.1002/aur.1792

23. *Rubinstein M, *Patowary A, Stanaway IB, McCord E, Nesbitt RR, Archer M, Scheuer T, Nickerson D, Raskind WH, Wijsman EM, Bernier R, Catterall WA, Brkanac Z. Association of rare missense variants in the second intracellular loop of NaV1.7 sodium channels with familial autism. Mol Psychiatry. 2016 Dec 13. doi: 10.1038/mp.2016.222. (shared 1 st author)

22. Chapman NH, Nato AQ Jr, Bernier R, Ankenman K, Sohi H, Munson J, Patowary AArcher M, Blue EM, Webb SJ, Coon H, Raskind WH, Brkanac Z, Wijsman EM; Whole exome sequencing in extended families with autism spectrum disorder implicates four candidate genes. Hum Genet. 2015 Oct;134(10):1055-68.

21. Periwal V, Patowary A, Vellarikkal SK, Gupta A, Singh M, Mittal A, Jeyapaul S, Chauhan RK, Singh AV, Singh PK, Garg P, Katoch VM, Katoch, K, OSDD Consortium, Chauhan DS, Sivasubbu S, Scaria V; Comparative Whole-Genome Analysis of Clinical Isolates Reveals Characteristic Architecture of Mycobacterium tuberculosis Pangenome. PLoS ONE  2015 Apr 8;10(4):e0122979.

20. Vellarikkal S K, Patowary A, Singh M, Kumari R, Faruq M, Master D C, Sivasubbu S, Scaria V; Exome sequencing reveals a novel mutation, p.L325H, in the KRT5 gene associated with autosomal dominant Epidermolysis Bullosa Simplex Koebner type in a large family from western India. Human Genome Variation 1, Article number: 14007 (2014) ​doi:10.1038/hgv.2014.7

19. Rajpathak SN, Vellarikkal SK, Patowary A, Scaria V, Sivasubbu S and Deobagkar DD; Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome. PLoS One 2014 Jun 16;9(6):e100076. PMID: 24932682

18. Singh M, Bhartiya D, Maini J, Sharma M, Singh AR, Kadarkaraisamy S, Rana R, Sabharwal A, Nanda S, Ramachandran A, Mittal A, Kapoor S, Sehgal P, Asad Z, Kaushik K, Vellarikkal SK, Jagga D, Muthuswami M, Chauhan RK, Leonard E, Priyadarshini R, Halimani M, Malhotra S, Patowary A, Vishwakarma H, Joshi P, Bhardwaj V, Bhaumik A, Bhatt B, Jha A, Kumar A, Budakoti P, Lalwani MK, Meli R, Jalali S, Joshi K, Pal K, Dhiman H, Laddha SV, Jadhav V, Singh N, Pandey V, Sachidanandan C, Ekker SC, Klee EW, Scaria V, Sivasubbu S. The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation. Database (Oxford). 2014 Feb 26;2014:bau011. PubMed PMID: 24578356.

17Kaushik K, Leonard VE, Shamsudheen KV, Lalwani MK, Jalali S, Patowary A, Joshi A, Scaria V, Sivasubbu S; Dynamic Expression of Long Non-coding RNAs (lncRNAs) in Adult Zebrafish. PLoS One. 2013 Dec 31;8(12):e83616. Pubmed PMID: 24391796 

16. Salleh MZ, Teh LK, Lee LS, Ismet RI, Patowary A, Joshi K, Pasha A, Ahmed AZ, Janor RM, Hamzah AS, Adam A, Yusoff K, Hoh BP, Hatta FH, Ismail MI, Scaria V, Sivasubbu S. Systematic pharmacogenomics analysis of a malay whole genome: proof  of concept for personalized medicine. PLoS One. 2013 Aug 23;8(8):e71554. PubMed PMID: 24009664.

15. Karuthedath Vellarikkal S*, Patowary A*, Singh M, Periwal V, Singh AV, Singh PK, Garg P, Mohan Katoch V, Katoch K, Jangir PK, Sharma R; Open Source Drug Discovery Consortium, Chauhan DS, Scaria V, Sivasubbu S. Draft Genome Sequence of a Clinical Isolate of Multidrug-Resistant Mycobacterium tuberculosis East African Indian Strain OSDD271. Genome Announc. 2013 Aug 1;1(4). PubMed PMID: 23908284.

14. Patowary A, Purkanti R, Singh M, Chauhan R, Singh AR, Swarnkar M, Singh N, Pandey V, Clark MD, Torroja C, Stemple DL, Kocher JP, Chark K, Klee E, Ekker SC, Scaria V, Sivasubbu S; A sequence-based variation map of Zebrafish. Zebrafish. 2013 Mar;10(1):15-20. PubMed PMID: 23590399.

13. Soni K, Choudhary A, Patowary A, Singh AR, Bhatia S, Sivasubbu S, Chandrasekaran S, Pillai B. miR-34 is maternally inherited in Drosophila melanogaster and Danio rerio. Nucleic Acids Res. 2013 Mar 6. PubMed PMID: 23470996.

12. Lalwani MK, Sharma M, Singh AR, Chauhan RK, Patowary A, Singh N, Scaria V, Sivasubbu S. Reverse genetics screen in zebrafish identifies a role of miR-142a-3p in vascular development and integrity. PLoS One. 2012;7(12):e52588. PubMed PMID: 23285103.

11. Bargaje R, Alam MP, Patowary A, Sarkar M, Ali T, Gupta S, Garg M, Singh M, Purkanti R, Scaria V, Sivasubbu S, Brahmachari V, Pillai B. Proximity of H2A.Z containing nucleosome to the transcription start site influences gene expression levels in the mammalian liver and brain. Nucleic Acids Res. 2012 Oct;40(18):8965-78. PubMed PMID: 22821566.

10. Sati S, Tanwar VS, Kumar KA, Patowary A, Jain V, Ghosh S, Ahmad S, Singh M, Reddy SU, Chandak GR, Raghunath M, Sivasubbu S, Chakraborty K, Scaria V, Sengupta S. High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region. PLoS One. 2012;7(2):e31621. PubMed PMID: 22355382.

9. Patowary A, Purkanti R, Singh M, Chauhan RK, Bhartiya D, Dwivedi OP, Chauhan G, Bharadwaj D, Sivasubbu S, Scaria V. Systematic analysis and functional annotation of variations in the genome of an Indian individual. Hum Mutat. 2012 Jul;33(7):1133-40. PubMed PMID: 22461382.

8. Patowary A, Chauhan RK, Singh M, Kv S, Periwal V, Kp K, Sapkal GN, Bondre VP, Gore MM, Sivasubbu S, Scaria V. De novo identification of viral pathogens from cell culture hologenomes. BMC Res Notes. 2012 Jan 6;5:11. PubMed PMID: 22226071. 

7. Dissanayake VHW, Samarakoon PS, Scaria V, Patowary A, Sivasubbu S, Gokhale RS.The Sri Lankan Personal Genome Project: an overview. Sri Lanka Journal of Bio-Medical Informatics, 2 (1). pp. 4-8. ISSN 2012-6077

6. Clark KJ, Balciunas D, Pogoda HM, Ding Y, Westcot SE, Bedell VM, Greenwood TM, Urban MD, Skuster KJ, Petzold AM, Ni J, Nielsen AL, Patowary A, Scaria V, Sivasubbu S, Xu X, Hammerschmidt M, Ekker SC. In vivo protein trapping produces a functional expression codex of the vertebrate proteome. Nat Methods. 2011 Jun;8(6):506-15. PubMed PMID: 21552255.

5. Bhartiya D, Maini J, Sharma M, Joshi P, Laddha SV, Jalali S, Patowary A, Purkanti R, Lalwani M, Singh AR, Chauhan R, Singh N, Bhardwaj A, Scaria V, Sivasubbu S. FishMap Zv8 update--a genomic regulatory map of zebrafish. Zebrafish. 2010 Jun;7(2):179-80. PubMed PMID: 20528264.

4. Kumar N, Patowary A, Sivasubbu S, Petersen M, Maiti S. Silencing c-MYC expression by targeting quadruplex in P1 promoter using locked nucleic acid trap. Biochemistry. 2008 Dec 16;47(50):13179-88. PubMed PMID: 19053274.

3. Sharma P, Kumar J, Garg G, Kumar A, Patowary A, Karthikeyan G, Ramakrishnan L, Brahmachari V, Sengupta S. Detection of altered global DNA methylation in coronary artery disease patients. DNA Cell Biol. 2008 Jul;27(7):357-65. PubMed PMID: 18613790.

2. Meli R, Prasad A, Patowary A, Lalwani MK, Maini J, Sharma M, Singh AR, Kumar G, Jadhav V, Scaria V, Sivasubbu S. FishMap: a community resource for zebrafish genomics. Zebrafish. 2008 Summer;5(2):125-30. PubMed PMID: 18554176.

1. D Kalita, S Sarmah, SP Das, D Baishya, A Patowary, S Baruah, NS Islam. Synthesis, characterization, reactivity and antibacterial activity of new peroxovanadium (V) complexes anchored to soluble polymers. Reactive and Functional Polymers 68 (4), 876-890